LAMMPS


LAMMPS

License: GPL-2.0 license


Description:

LAMMPS is a classical molecular dynamics simulation code designed to run efficiently on parallel computers. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL) version 2.

Avogadro

Avogadro

License: BSD-3-Clause


Description:

Avogadro is a free, open source molecular editor and visualization tool suitable for students and researchers. It supports molecules, crystals, biomolecules, and surfaces, offering a sleek, intuitive interface with advanced 3D rendering. It is widely used in computational chemistry, molecular modeling, and education, and is highly extendable through plugins.

OpenMM


OpenMM

License: MIT, LGPL


Description:

OpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call from your own code. It provides a combination of extreme flexibility (through custom forces and integrators), openness, and high performance (especially on recent GPUs) that make it truly unique among simulation codes.

Gabedit

Gabedit

License: https://sites.google.com/site/allouchear/Home/gabedit/license


Description:

Gabedit is a graphical user interface for computational chemistry software. It simplifies the process of setting up and analyzing molecular calculations, making quantum chemistry accessible and user-friendly.

Jmol


Jmol

License: LGPL


Description:

Jmol is an open-source 3D viewer for chemical structures, molecules, and materials. It provides visualization and analysis tools for scientists, students, and educators. The software is available through SourceForge and is used worldwide in research and education for molecular modeling.

Kalzium


Kalzium

License: GPLv2+


Description:

Kalzium is an educational program that displays the Periodic Table of Elements, offering data search, isotope visualization, spectral lines, and tools for molecular visualization and stoichiometry. It’s designed for learning and exploring chemistry facts.

ORAC!


ORAC!

License: GNU General Public License (GPL)


Description:

ORAC! is an open-source molecular dynamics engine for simulating solvated biomolecules, supporting advanced sampling techniques and parallel architectures. It offers a range of features including generalized ensemble simulations, replica exchange, and metadynamics, primarily targeted at atomistic level biomolecular research.

Massively Parallel Quantum Chemistry Program (MPQC)


Massively Parallel Quantum Chemistry Program (MPQC)

License: GPL v3+


Description:

MPQC is an open-source platform for ab initio electronic structure simulations using many-body methods, optimized for massively parallel computing environments. It features a tensor framework, distributed task programming, and quantum chemistry libraries, with comprehensive documentation and open licensing.