puter


puter

License: AGPLv3


Description:

Puter is an open-source internet operating system that functions as a personal cloud, web platform, and remote desktop environment. It’s designed to be fast, extensible, and self-hostable, providing a secure, accessible space for files, apps, and games with community support.

metadata-editor

metadata-editor

License: MIT license


Description:

An open-source web-based tool by the World Bank for editing, validating, and managing metadata for various data types including microdata, publications, reports, indicators, geospatial data, images, videos, and research projects.

Psi4


Psi4

License: LGPLv3, GLPv3


Description:

Psi4 is an open-source suite of ab initio quantum chemistry programs designed for efficient, high-accuracy simulations of molecular properties. We routinely perform computations with >2500 basis functions on multi-core machines.

With computationally demanding portions written in C++, exports of many C++ classes into Python via Pybind11, and a flexible Python driver, Psi4 strives to be friendly to both users and developers.

PyMOL

PyMOL

License:


Description:

PyMOL is an open-source molecular visualization system known for 3D visualization of biomolecules such as proteins and nucleotides. It is widely used in structural biology and computational chemistry for rendering high-quality images and animations of molecular structures.

LAMMPS


LAMMPS

License: GPL-2.0 license


Description:

LAMMPS is a classical molecular dynamics simulation code designed to run efficiently on parallel computers. It was developed at Sandia National Laboratories, a US Department of Energy facility, with funding from the DOE. It is an open-source code, distributed freely under the terms of the GNU Public License (GPL) version 2.

Avogadro

Avogadro

License: BSD-3-Clause


Description:

Avogadro is a free, open source molecular editor and visualization tool suitable for students and researchers. It supports molecules, crystals, biomolecules, and surfaces, offering a sleek, intuitive interface with advanced 3D rendering. It is widely used in computational chemistry, molecular modeling, and education, and is highly extendable through plugins.

OpenMM


OpenMM

License: MIT, LGPL


Description:

OpenMM is a toolkit for molecular simulation. It can be used either as a stand-alone application for running simulations, or as a library you call from your own code. It provides a combination of extreme flexibility (through custom forces and integrators), openness, and high performance (especially on recent GPUs) that make it truly unique among simulation codes.